Mercurial > repos > iuc > data_manager_fetch_index_maf

comparison data_manager_conf.xml @ 0:aed50ca398bb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 9c8e61ce03ebd67c2c852f5db4a62d19200c77fe"
author iuc
date Thu, 25 Jun 2020 14:02:25 -0400
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-1:000000000000 0:aed50ca398bb
1 <?xml version="1.0"?>
2 <data_managers tool_path="tools">
3 <data_manager tool_file="data_manager_fetch_index_maf/data_manager/data_manager_fetch_and_index_maf.xml" id="data_manager_fetch_and_index_maf">
4 <data_table name="indexed_maf_files">
5 <output>
6 <column name="name" />
7 <column name="value" />
8 <column name="indexed_for" />
9 <column name="exists_in_maf" />
10 <column name="path" output_ref="output" >
11 <move type="directory" relativize_symlinks="True">
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/align/${value}</target>
13 </move>
14 <value_translation>#echo ','.join([os.path.join($GALAXY_DATA_MANAGER_DATA_PATH, '%s' % dbkey, 'align', '%s' % $value, $filename) for filename in $path.split(',')])</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
19 </data_manager>
20 </data_managers>