Mercurial > repos > iuc > data_manager_fetch_refseq

changeset 2:5d2ef93c6314 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 15:47:16 -0500
parents 937f167631b1
children f1e545aa76c7
files data_manager/fetch_refseq.xml
diffstat 1 files changed, 4 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/fetch_refseq.xml	Sun Jan 13 09:26:57 2019 -0500
+++ b/data_manager/fetch_refseq.xml	Thu Nov 28 15:47:16 2019 -0500
@@ -1,11 +1,11 @@
-<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.18" tool_type="manage_data">
+<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.19" tool_type="manage_data" profile="19.05">
     <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description>
     <requirements>
-        <requirement type="package">python</requirement>
-        <requirement type="package">requests</requirement>
+        <requirement type="package" version="3.7">python</requirement>
+        <requirement type="package" version="2.22.0">requests</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-    python $__tool_directory__/fetch_refseq.py
+    python '$__tool_directory__/fetch_refseq.py'
       #if str( $advanced.advanced_selector ) == 'advanced':
         ${advanced.compress}
       #end if
@@ -65,7 +65,6 @@
                 <assert_contents>
                     <has_text text="2018-03-14"/>
                     <has_text text="refseq_plastid"/>
-                    <has_text text="/refseq_plastid."/>
                 </assert_contents>
             </output>
         </test>
@@ -79,7 +78,6 @@
                 <assert_contents>
                     <has_text text="2018-03-14"/>
                     <has_text text="refseq_plastid"/>
-                    <has_text text="/refseq_plastid."/>
                 </assert_contents>
             </output>
         </test>