Mercurial > repos > iuc > data_manager_fetch_refseq

changeset 1:937f167631b1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 8cad1e44b2393cb36f60a4d705536dee235a8434
author iuc
date Sun, 13 Jan 2019 09:26:57 -0500
parents 8b91891ae805
children 5d2ef93c6314
files data_manager/fetch_refseq.xml
diffstat 1 files changed, 16 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/fetch_refseq.xml	Mon Oct 01 15:36:01 2018 -0400
+++ b/data_manager/fetch_refseq.xml	Sun Jan 13 09:26:57 2019 -0500
@@ -7,7 +7,7 @@
     <command detect_errors="exit_code"><![CDATA[
     python $__tool_directory__/fetch_refseq.py
       #if str( $advanced.advanced_selector ) == 'advanced':
-        '${advanced.compress}'
+        ${advanced.compress}
       #end if
       --galaxy_datamanager_filename '${output_file}'
       --division_names ${division_names}
@@ -69,6 +69,21 @@
                 </assert_contents>
             </output>
         </test>
+        <test>
+            <param name="division_names" value="plastid"/>
+            <param name="mol_types" value="protein"/>
+            <param name="pin_date" value="2018-03-14"/>            
+            <param name="advanced_selector" value="advanced"/>
+            <param name="compress" value="" />
+            <output name="output_file">
+                <assert_contents>
+                    <has_text text="2018-03-14"/>
+                    <has_text text="refseq_plastid"/>
+                    <has_text text="/refseq_plastid."/>
+                </assert_contents>
+            </output>
+        </test>
+
     </tests>
     <help><![CDATA[
 This data manager fetches FASTA format collections of proteins, nucleotides (genomic DNA) and RNA