Mercurial > repos > iuc > data_manager_fetch_refseq

changeset 3:f1e545aa76c7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit f633fe1d97bedff14dbbffcbcc028a3ce9d1d1f2"
author iuc
date Sun, 19 Apr 2020 14:44:09 -0400
parents 5d2ef93c6314
children d58cad5baa70
files data_manager/fetch_refseq.xml data_manager_conf.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/fetch_refseq.xml	Thu Nov 28 15:47:16 2019 -0500
+++ b/data_manager/fetch_refseq.xml	Sun Apr 19 14:44:09 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.19" tool_type="manage_data" profile="19.05">
+<tool id="data_manager_fetch_refseq" name="RefSeq data manager" version="0.0.20" tool_type="manage_data" profile="19.05">
     <description>Fetch FASTA data from NCBI RefSeq and update all_fasta data table</description>
     <requirements>
         <requirement type="package" version="3.7">python</requirement>
--- a/data_manager_conf.xml	Thu Nov 28 15:47:16 2019 -0500
+++ b/data_manager_conf.xml	Sun Apr 19 14:44:09 2020 -0400
@@ -11,7 +11,7 @@
                         <source>${path}</source>
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target>
                     </move>
-                    <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>