Mercurial > repos > iuc > data_manager_funannotate

comparison data_manager/funannotate.xml @ 2:13018941c6a0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_funannotate commit 2c9bec50907576e22b02b8ea570073018c635475"
author iuc
date Fri, 19 Nov 2021 11:15:54 +0000
parents 8dff71edbce5
children 0cadd0a04412
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1:8dff71edbce5 2:13018941c6a0
1 <tool id="data_manager_funannotate" name="Funannotate data manager" version="0.0.2" tool_type="manage_data" profile="20.01"> 1 <tool id="data_manager_funannotate" name="Funannotate data manager" version="0.0.3" tool_type="manage_data" profile="20.01">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.8.9">funannotate</requirement> 3 <requirement type="package" version="1.8.9">funannotate</requirement>
4 <requirement type="package" version="2.26.0">requests</requirement> 4 <requirement type="package" version="2.26.0">requests</requirement>
5 </requirements> 5 </requirements>
6 <version_command>funannotate check --show-versions</version_command> 6 <version_command>funannotate check --show-versions</version_command>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 python -u '$__tool_directory__/funannotate.py' 8 python -u '$__tool_directory__/funannotate.py'
9 $partial_data 9 $partial_data
10 $wget
10 \$(date +'%Y-%m-%d-%H%M%S') 11 \$(date +'%Y-%m-%d-%H%M%S')
11 'funannotate' 12 'funannotate'
12 '${output_file}' 13 '${output_file}'
13 ]]></command> 14 ]]></command>
14 <inputs> 15 <inputs>
15 <param name="partial_data" type="hidden" value="" help="Used for testing"/> 16 <param name="partial_data" type="hidden" value="" help="Used for testing"/>
17 <param name="wget" type="boolean" truevalue="--wget" falsevalue="" checked="False" label="Download using wget" help="Try this if you get certificate errors"/>
16 </inputs> 18 </inputs>
17 <outputs> 19 <outputs>
18 <data name="output_file" format="data_manager_json"/> 20 <data name="output_file" format="data_manager_json"/>
19 </outputs> 21 </outputs>
20 <tests> 22 <tests>
21 <test> 23 <test>
22 <param name="partial_data" value="--partial"/> 24 <param name="partial_data" value="--partial"/>
25 <output name="output_file">
26 <assert_contents>
27 <has_text text="Funannotate database "/>
28 <has_text text='"format_version": "1.0"'/>
29 </assert_contents>
30 </output>
31 </test>
32 <test>
33 <param name="partial_data" value="--partial"/>
34 <param name="wget" value="True"/>
23 <output name="output_file"> 35 <output name="output_file">
24 <assert_contents> 36 <assert_contents>
25 <has_text text="Funannotate database "/> 37 <has_text text="Funannotate database "/>
26 <has_text text='"format_version": "1.0"'/> 38 <has_text text='"format_version": "1.0"'/>
27 </assert_contents> 39 </assert_contents>