Mercurial > repos > iuc > data_manager_funannotate
comparison data_manager/funannotate.xml @ 0:ef7f9e2f32f2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_funannotate commit 9613152729099079c7465c3d5d42005ef22ca91e"
| author | iuc |
|---|---|
| date | Thu, 26 Aug 2021 06:54:45 +0000 |
| parents | |
| children | 8dff71edbce5 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:ef7f9e2f32f2 |
|---|---|
| 1 <tool id="data_manager_funannotate" name="Funannotate data manager" version="0.0.1" tool_type="manage_data" profile="20.01"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="1.8.7">funannotate</requirement> | |
| 4 </requirements> | |
| 5 <version_command>funannotate check --show-versions</version_command> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 python '$__tool_directory__/funannotate.py' | |
| 8 $partial_data | |
| 9 \$(date +'%Y-%m-%d-%H%M%S') | |
| 10 'funannotate' | |
| 11 '${output_file}' | |
| 12 ]]></command> | |
| 13 <inputs> | |
| 14 <param name="partial_data" type="hidden" value="" help="Used for testing"/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data name="output_file" format="data_manager_json"/> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 <test> | |
| 21 <param name="partial_data" value="--partial"/> | |
| 22 <output name="output_file"> | |
| 23 <assert_contents> | |
| 24 <has_text text="Funannotate database "/> | |
| 25 <has_text text='"format_version": "1.0"'/> | |
| 26 </assert_contents> | |
| 27 </output> | |
| 28 </test> | |
| 29 </tests> | |
| 30 <help><![CDATA[ | |
| 31 This data managers fetches data from various databases for the funannotate | |
| 32 annotation tool and updates the funannotate data table. | |
| 33 | |
| 34 .. _funannotate: https://funannotate.readthedocs.io | |
| 35 ]]></help> | |
| 36 <citations> | |
| 37 <citation type="doi">10.5281/zenodo.4054262</citation> | |
| 38 </citations> | |
| 39 </tool> |