Mercurial > repos > iuc > data_manager_funannotate
diff data_manager/funannotate.py @ 2:13018941c6a0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_funannotate commit 2c9bec50907576e22b02b8ea570073018c635475"
| author | iuc |
|---|---|
| date | Fri, 19 Nov 2021 11:15:54 +0000 |
| parents | 8dff71edbce5 |
| children |
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--- a/data_manager/funannotate.py Thu Nov 18 21:55:43 2021 +0000 +++ b/data_manager/funannotate.py Fri Nov 19 11:15:54 2021 +0000 @@ -224,6 +224,7 @@ parser = argparse.ArgumentParser() parser.add_argument('--partial', dest='partial', action='store_true', help='Only download a small subset of data (for testing)') + parser.add_argument('--wget', dest='wget', action='store_true', help='Download using wget (instead of urllib)') parser.add_argument("version_id") parser.add_argument("datatable_name") parser.add_argument("galaxy_datamanager_filename") @@ -243,6 +244,8 @@ cmd_args = ['funannotate', 'setup', '-d', output_directory, '-b', 'all'] if args.partial: cmd_args += ['-i', 'merops', '-b', 'eukaryota'] + if args.wget: + cmd_args += ['--wget'] proc = subprocess.Popen(args=cmd_args, shell=False, cwd=output_directory) return_code = proc.wait() if return_code: