Mercurial > repos > iuc > data_manager_gemini_database_downloader

comparison data_manager_conf.xml @ 4:fe5a9a7d95b0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:40:15 -0500
parents fd9e9ac5ecb3
children
comparison
equal deleted inserted replaced
3:172815da3d41 4:fe5a9a7d95b0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" > 3 <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" >
4 <data_table name="gemini_databases"> <!-- Defines a Data Table to be modified. --> 4 <data_table name="gemini_versioned_databases"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 9 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" > 10 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True"> 11 <move type="directory" relativize_symlinks="True">
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/data/${dbkey}/${value}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/${version}/${dbkey}/${value}</target>
12 </move> 13 </move>
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/data/${dbkey}/${value}/gemini/data/</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/${version}/${dbkey}/${value}/</value_translation>
14 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
15 </column> 16 </column>
16 </output> 17 </output>
17 </data_table> 18 </data_table>
18 </data_manager> 19 </data_manager>