Mercurial > repos > iuc > data_manager_gemini_database_downloader
comparison data_manager_conf.xml @ 4:fe5a9a7d95b0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
author | iuc |
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date | Fri, 14 Dec 2018 12:40:15 -0500 |
parents | fd9e9ac5ecb3 |
children |
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3:172815da3d41 | 4:fe5a9a7d95b0 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <data_managers> | 2 <data_managers> |
3 <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" > | 3 <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" > |
4 <data_table name="gemini_databases"> <!-- Defines a Data Table to be modified. --> | 4 <data_table name="gemini_versioned_databases"> <!-- Defines a Data Table to be modified. --> |
5 <output> <!-- Handle the output of the Data Manager Tool --> | 5 <output> <!-- Handle the output of the Data Manager Tool --> |
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> |
7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> | 7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> |
8 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
8 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | 9 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> |
9 <column name="path" output_ref="out_file" > | 10 <column name="path" output_ref="out_file" > |
10 <move type="directory" relativize_symlinks="True"> | 11 <move type="directory" relativize_symlinks="True"> |
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/data/${dbkey}/${value}</target> | 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/${version}/${dbkey}/${value}</target> |
12 </move> | 13 </move> |
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/data/${dbkey}/${value}/gemini/data/</value_translation> | 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/${version}/${dbkey}/${value}/</value_translation> |
14 <value_translation type="function">abspath</value_translation> | 15 <value_translation type="function">abspath</value_translation> |
15 </column> | 16 </column> |
16 </output> | 17 </output> |
17 </data_table> | 18 </data_table> |
18 </data_manager> | 19 </data_manager> |