--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_gemini_download.py	Mon Aug 25 17:15:46 2014 -0400
@@ -0,0 +1,35 @@
+#!/usr/bin/env python
+
+import sys
+import os
+import json
+import shlex
+import datetime
+import subprocess
+
+def main():
+
+    today = datetime.date.today()
+    gemini_root_dir = os.environ['GEMINI_ROOT_DIR']
+    params = json.loads( open( sys.argv[1] ).read() )
+    target_directory = params[ 'output_data' ][0]['extra_files_path']
+    os.mkdir( target_directory )
+    gemini_exec = os.path.join( gemini_root_dir, 'gemini', 'gemini', 'install-data.py' )
+    cmd = gemini_exec + " %s %s" % (' '.join( [params['param_dict']['gerp_bp'], params['param_dict']['cadd']] ), target_directory)
+    #cmd = gemini_exec + " --help > %s/foo.txt" % target_directory
+    ret = subprocess.check_call( cmd, shell=True )
+    data_manager_dict = { 
+                'data_tables': 
+                    {'gemini_databases': [ 
+                            {'value': today.isoformat(), 'dbkey': 'hg19', 'name': 'GEMINI annotations (%s)' % today.isoformat(), 'path': './%s' % today.isoformat() } 
+                                        ] 
+                    }
+                }
+
+    #save info to json file
+    with open( sys.argv[1], 'wb' ) as out:
+        out.write( json.dumps( data_manager_dict ) )
+
+if __name__ == "__main__":
+    main()
+