diff data_manager/data_manager_gemini_download.xml @ 0:fd9e9ac5ecb3 draft

Imported from capsule None
author iuc
date Mon, 25 Aug 2014 17:15:46 -0400
parents
children a580422f6f1d
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_gemini_download.xml	Mon Aug 25 17:15:46 2014 -0400
@@ -0,0 +1,37 @@
+<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.9.1" tool_type="manage_data">
+    <description>Download a new database</description>
+    <requirements>
+        <requirement type="package" version="0.10.0">gemini</requirement>
+    </requirements>
+    <command interpreter="python">
+        data_manager_gemini_download.py "$out_file"
+    </command>
+    <inputs>
+        <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" 
+            label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
+
+        <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" 
+            label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
+    </inputs>
+    <outputs>
+           <data name="out_file" format="data_manager_json" label="${tool.name}"/>
+    </outputs>
+    <stdio>
+        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
+        <exit_code range="1:"  level="fatal" description="Error" />
+    </stdio>
+    <tests>
+    </tests>
+    <help>
+
+This tool downloads the GEMINI databases.
+
+For details about this tool, please go to http://http://gemini.readthedocs.org
+
+    </help>
+    <citations>
+        <citation type="doi">10.1371/journal.pcbi.1003153</citation>
+        <yield />
+    </citations>
+</tool>
+