Mercurial > repos > iuc > data_manager_gemini_database_downloader

diff data_manager/data_manager_gemini_download.xml @ 9:27a6a256cd23 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 275b7863ff4f8b0dff9cd7ea6c4b635694f0168d
author iuc
date Sat, 03 Dec 2022 10:37:24 +0000
parents f57426daa04d
children
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--- a/data_manager/data_manager_gemini_download.xml	Sun Nov 22 12:49:35 2020 +0000
+++ b/data_manager/data_manager_gemini_download.xml	Sat Dec 03 10:37:24 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@" tool_type="manage_data">
+<tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09">
     <description>the annotation files required by the GEMINI suite of tools</description>
     <macros>
         <token name="@VERSION@">0.20.1</token>
@@ -11,16 +11,32 @@
         python '$__tool_directory__/data_manager_gemini_download.py' '$out_file'
     </command>
     <inputs>
-        <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
+        <param name="cadd" type="boolean" truevalue="cadd" falsevalue="" checked="True"
             label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
-        <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
+        <param name="gerp_bp" type="boolean" truevalue="gerp_bp" falsevalue="" checked="True"
             label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
         <param name="gemini_db_version" type="hidden" value="@DB_VERSION@"/>
+        <param name="test_data_manager" type="hidden" value=""/>
     </inputs>
     <outputs>
         <data name="out_file" format="data_manager_json" label="${tool.name}"/>
     </outputs>
     <tests>
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test" />
+            <param name="cadd" value="false" />
+            <param name="gerp_bp" value="false" />
+            <output name="out_file" file="test.json" compare="re_match" />
+        </test>
+        <!-- Test 2 with the latest option -->
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test" />
+            <output name="out_file">
+                <assert_contents>
+                    <has_text text="&quot;name&quot;: &quot;GEMINI annotations w/ GERP &amp; CADD" />
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help>
 This tool downloads the GEMINI annotation files and makes them available to