Mercurial > repos > iuc > data_manager_gemini_database_downloader
diff data_manager/data_manager_gemini_download.xml @ 9:27a6a256cd23 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 275b7863ff4f8b0dff9cd7ea6c4b635694f0168d
author | iuc |
---|---|
date | Sat, 03 Dec 2022 10:37:24 +0000 |
parents | f57426daa04d |
children |
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--- a/data_manager/data_manager_gemini_download.xml Sun Nov 22 12:49:35 2020 +0000 +++ b/data_manager/data_manager_gemini_download.xml Sat Dec 03 10:37:24 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@" tool_type="manage_data"> +<tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09"> <description>the annotation files required by the GEMINI suite of tools</description> <macros> <token name="@VERSION@">0.20.1</token> @@ -11,16 +11,32 @@ python '$__tool_directory__/data_manager_gemini_download.py' '$out_file' </command> <inputs> - <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" + <param name="cadd" type="boolean" truevalue="cadd" falsevalue="" checked="True" label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/> - <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" + <param name="gerp_bp" type="boolean" truevalue="gerp_bp" falsevalue="" checked="True" label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/> <param name="gemini_db_version" type="hidden" value="@DB_VERSION@"/> + <param name="test_data_manager" type="hidden" value=""/> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> + <test expect_num_outputs="1"> + <param name="test_data_manager" value="--test" /> + <param name="cadd" value="false" /> + <param name="gerp_bp" value="false" /> + <output name="out_file" file="test.json" compare="re_match" /> + </test> + <!-- Test 2 with the latest option --> + <test expect_num_outputs="1"> + <param name="test_data_manager" value="--test" /> + <output name="out_file"> + <assert_contents> + <has_text text=""name": "GEMINI annotations w/ GERP & CADD" /> + </assert_contents> + </output> + </test> </tests> <help> This tool downloads the GEMINI annotation files and makes them available to