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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 275b7863ff4f8b0dff9cd7ea6c4b635694f0168d
author iuc
date Sat, 03 Dec 2022 10:37:24 +0000
parents fe5a9a7d95b0
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" >
        <data_table name="gemini_versioned_databases">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="directory" relativize_symlinks="True">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/${version}/${dbkey}/${value}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/${version}/${dbkey}/${value}/</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>