Mercurial > repos > iuc > data_manager_gtdbtk_database_installer
diff data_manager/gtdbtk_database_installer.xml @ 4:10232d2b5062 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit 0bb620025a61de6caa8a93537fec8ea65eda43be
| author | iuc |
|---|---|
| date | Fri, 16 Aug 2024 08:44:14 +0000 |
| parents | 6ab422fba1a3 |
| children | e7b39a7e0024 |
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--- a/data_manager/gtdbtk_database_installer.xml Wed Aug 14 18:02:46 2024 +0000 +++ b/data_manager/gtdbtk_database_installer.xml Fri Aug 16 08:44:14 2024 +0000 @@ -36,26 +36,38 @@ <test> <!-- TODO --> <!-- Not actually installing a huge GTDB-Tk database --> + <!-- but it will check if all urls exist --> <param name="release" value="202"/> <param name="database_name" value="GTDB-Tk database release 202"/> <param name="test" value="--test"/> <output name="out_file"> <assert_contents> <has_text text="GTDB-Tk database release 202"/> - <has_text text="release_test"/> + <has_text text="release_202"/> </assert_contents> </output> </test> <test> - <!-- Test meta data download --> - <param name="release" value="202"/> - <param name="database_name" value="GTDB-Tk database release 202 metadata"/> + <!-- Test meta data download with tsv.gz--> + <param name="release" value="220"/> + <param name="database_name" value="GTDB-Tk database release 220 metadata"/> <param name="meta" value="true"/> - <param name="test" value="--test"/> <output name="out_file"> <assert_contents> - <has_text text="GTDB-Tk database release 202 metadata"/> - <has_text text="release_test"/> + <has_text text="GTDB-Tk database release 220 metadata"/> + <has_text text="release_220"/> + </assert_contents> + </output> + </test> + <test> + <!-- Test meta data download with tar.gz --> + <param name="release" value="207"/> + <param name="database_name" value="GTDB-Tk database release 207 metadata"/> + <param name="meta" value="true"/> + <output name="out_file"> + <assert_contents> + <has_text text="GTDB-Tk database release 207 metadata"/> + <has_text text="release_207"/> </assert_contents> </output> </test>