Mercurial > repos > iuc > data_manager_hisat2_index_builder
comparison tool-data/all_fasta.loc.sample @ 5:8eac26f44d29 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_hisat2_index_builder commit 05c191c21eba39e75a8c8d6e6a00d8db63552695"
| author | iuc |
|---|---|
| date | Mon, 18 Nov 2019 17:22:30 -0500 |
| parents | d3eb4d51b285 |
| children |
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| 4:d210e1f185bd | 5:8eac26f44d29 |
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| 2 #under the "genome" directory (a directory that contains a directory | 2 #under the "genome" directory (a directory that contains a directory |
| 3 #for each build). The script extract_fasta.py will generate the file | 3 #for each build). The script extract_fasta.py will generate the file |
| 4 #all_fasta.loc. This file has the format (white space characters are | 4 #all_fasta.loc. This file has the format (white space characters are |
| 5 #TAB characters): | 5 #TAB characters): |
| 6 # | 6 # |
| 7 #<unique_build_id> <dbkey> <display_name> <file_path> | 7 #<unique_build_id> <dbkey> <display_name> <file_path> |
| 8 # | 8 # |
| 9 #So, all_fasta.loc could look something like this: | 9 #So, all_fasta.loc could look something like this: |
| 10 # | 10 # |
| 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa |
| 12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa | 12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa |
| 13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa | 13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa |
| 14 # | 14 # |
| 15 #Your all_fasta.loc file should contain an entry for each individual | 15 #Your all_fasta.loc file should contain an entry for each individual |
| 16 #fasta file. So there will be multiple fasta files for each build, | 16 #fasta file. So there will be multiple fasta files for each build, |
| 17 #such as with hg19 above. | 17 #such as with hg19 above. |
| 18 # | 18 # |