Mercurial > repos > iuc > data_manager_homer_preparse

annotate data_manager_conf.xml @ 3:679673fbf0b4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:30:23 +0000
parents d9c177013aba
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
2 <data_managers>
3
679673fbf0b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 1
diff changeset
3 <data_manager tool_file="data_manager/homer_genome_preparse.xml" id="homer_genome_preparse">
0
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
4 <data_table name="homer_preparse">
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
5 <output>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
6 <column name="value" />
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
7 <column name="dbkey" />
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
8 <column name="mask" />
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
9 <column name="size" />
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
10 <column name="name" />
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
11 <column name="path" output_ref="out_file" >
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
12 <move type="directory" relativize_symlinks="True">
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/homer_preparse/${value}</target>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
14 </move>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/homer_preparse/${value}</value_translation>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
16 <value_translation type="function">abspath</value_translation>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
17 </column>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
18 <column name="path_fasta"/>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
19 <column name="version" />
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
20 </output>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
21 </data_table>
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
22 </data_manager>
3
679673fbf0b4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 1
diff changeset
23 <data_manager tool_file="data_manager/homer_install_promoters.xml" id="homer_install_promoters">
1
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
24 <data_table name="homer_promoters">
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
25 <output>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
26 <column name="value"/>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
27 <column name="dbkey"/>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
28 <column name="organism"/>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
29 <column name="path" output_ref="out_file" >
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
30 <move type="directory" relativize_symlinks="True">
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
31 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">homer_promoters/${value}</target>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
32 </move>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
33 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/homer_promoters/${value}</value_translation>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
34 <value_translation type="function">abspath</value_translation>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
35 </column>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
36 <column name="organism_version"/>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
37 <column name="promoter_version"/>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
38 </output>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
39 </data_table>
d9c177013aba planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents: 0
diff changeset
40 </data_manager>
0
e6a2110ac3b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
iuc
parents:
diff changeset
41 </data_managers>