Mercurial > repos > iuc > data_manager_humann2_database_downloader

comparison data_manager/data_manager_humann2_download.xml @ 1:1316375a8cbb draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b46aa969c01b7e5f4f133192899fa4da286ecf89-dirty
author iuc
date Mon, 13 Mar 2017 12:34:20 -0400
parents 048593e41359
children 6112a571f012
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0:048593e41359 1:1316375a8cbb
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 7 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
8 <exit_code range="1:" level="fatal" description="Error" /> 8 <exit_code range="1:" level="fatal" description="Error" />
9 </stdio> 9 </stdio>
10 <command interpreter="python"> 10 <command>
11 data_manager_humann2_download.py 11 python '$__tool_directory__/data_manager_humann2_download.py'
12 --database '$db.database' 12 --database '$db.database'
13 --build '$db.build' 13 --build $db.build
14 '${out_file}' 14 '${out_file}'
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <conditional name="db"> 17 <conditional name="db">
18 <param name="database" type="select" label="Type of database to download"> 18 <param name="database" type="select" label="Type of database to download">
36 </param> 36 </param>
37 </when> 37 </when>
38 </conditional> 38 </conditional>
39 </inputs> 39 </inputs>
40 <outputs> 40 <outputs>
41 <data name="out_file" format="data_manager_json" label="${tool.name}"/> 41 <data name="out_file" format="data_manager_json" label="${tool.name}" />
42 </outputs> 42 </outputs>
43 <tests> 43 <tests>
44 </tests> 44 </tests>
45 <help> 45 <help>
46
47 This tool downloads the HUMAnN2 databases. 46 This tool downloads the HUMAnN2 databases.
48 47
49 `Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_. 48 Read more about the tool at http://huttenhower.sph.harvard.edu/humann2/manual .
50
51 </help> 49 </help>
52 <citations> 50 <citations>
53 <citation type="doi">10.1371/journal.pcbi.1003153</citation> 51 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
54 <yield />
55 </citations> 52 </citations>
56 </tool> 53 </tool>