Mercurial > repos > iuc > data_manager_humann_database_downloader

annotate data_manager_conf.xml @ 3:19bbd19b74b3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 32d4c566afe55179531fdd106dc5a996cc09bbb1
author iuc
date Wed, 29 Mar 2023 19:58:02 +0000
parents 60eb2512c5a0
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
iuc
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1 <data_managers>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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2 <data_manager tool_file="data_manager/data_manager_humann_download.xml" id="data_manager_humann_download" >
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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3 <data_table name="humann_nucleotide_database"> <!-- Defines a Data Table to be modified. -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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4 <output> <!-- Handle the output of the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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5 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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6 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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8 <column name="path" output_ref="out_file" >
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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9 <move type="directory">
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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10 <source>${path}</source>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann/data/nucleotide_database/${value}</target>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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12 </move>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann/data/nucleotide_database/${value}</value_translation>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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14 </column>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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15 </output>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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16 </data_table>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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17 <data_table name="humann_protein_database"> <!-- Defines a Data Table to be modified. -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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18 <output> <!-- Handle the output of the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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19 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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20 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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21 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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22 <column name="path" output_ref="out_file" >
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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23 <move type="directory">
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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24 <source>${path}</source>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann/data/protein_database/${value}</target>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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26 </move>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann/data/protein_database/${value}</value_translation>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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28 </column>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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29 </output>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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30 </data_table>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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31 <data_table name="humann_utility_mapping"> <!-- Defines a Data Table to be modified. -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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32 <output> <!-- Handle the output of the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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33 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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34 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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35 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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36 <column name="path" output_ref="out_file" >
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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37 <move type="file" relativize_symlinks="False">
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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38 <source>${path}</source>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann/data/utility_mapping/${value}</target>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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40 </move>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann/data/utility_mapping/${value}</value_translation>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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42 </column>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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43 </output>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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44 </data_table>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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45 </data_manager>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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46 </data_managers>
60eb2512c5a0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
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47