annotate data_manager_conf.xml @ 3:15c2fc266540 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit a54e50916ebdb0858b049cdc549a43df801e1a71
author iuc
date Tue, 21 May 2024 07:36:22 +0000
parents 4c7ebbad42cf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
2 <data_managers>
2
4c7ebbad42cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 0
diff changeset
3 <data_manager tool_file="data_manager/kallisto_index_builder.xml" id="kallisto_index_builder">
0
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
4 <data_table name="kallisto_indexes">
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
5 <output>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
6 <column name="value" />
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
7 <column name="dbkey" />
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
8 <column name="name" />
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
9 <column name="path" output_ref="out_file" >
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
10 <move type="directory" relativize_symlinks="True">
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/kallisto_index/${value}</target>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
13 </move>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/kallisto_index/${value}/${path}</value_translation>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
16 </column>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
17 </output>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
18 </data_table>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
19 </data_manager>
6843a0db2da0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_kallisto_index_builder commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
20 </data_managers>