Mercurial > repos > iuc > data_manager_manual

comparison data_manager/data_manager_manual.py @ 5:744f607fac50 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_manual commit de6f0a7b126cc5abaee41c73cf2a9876ab0b437e"
author iuc
date Mon, 21 Oct 2019 06:30:45 -0400
parents 1ed87dee9e68
children 2445a874543a
comparison
equal deleted inserted replaced
4:1ed87dee9e68 5:744f607fac50
62 # Dynamically add this data table 62 # Dynamically add this data table
63 log.debug("Attempting to dynamically create a missing Tool Data Table named %s." % data_table_name) 63 log.debug("Attempting to dynamically create a missing Tool Data Table named %s." % data_table_name)
64 repo_info = tdtm.generate_repository_info_elem_from_repository(tool_shed_repository, parent_elem=None) 64 repo_info = tdtm.generate_repository_info_elem_from_repository(tool_shed_repository, parent_elem=None)
65 if repo_info is not None: 65 if repo_info is not None:
66 repo_info = tostring(repo_info) 66 repo_info = tostring(repo_info)
67 tmp_file = tempfile.NamedTemporaryFile() 67 tmp_file = tempfile.NamedTemporaryFile(mode="w")
68 tmp_file.write(__get_new_xml_definition(app, data_table, data_manager, repo_info, target_dir)) 68 tmp_file.write(__get_new_xml_definition(app, data_table, data_manager, repo_info, target_dir))
69 tmp_file.flush() 69 tmp_file.flush()
70 app.tool_data_tables.add_new_entries_from_config_file(tmp_file.name, None, app.config.shed_tool_data_table_config, persist=True) 70 app.tool_data_tables.add_new_entries_from_config_file(tmp_file.name, None, app.config.shed_tool_data_table_config, persist=True)
71 tmp_file.close() 71 tmp_file.close()
72 72