Mercurial > repos > iuc > data_manager_manual

diff data_manager/data_manager_manual.xml @ 4:1ed87dee9e68 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_manual commit b775a4c6248f00430a9ab1b2a4e1afa255ac57a2"
author iuc
date Wed, 16 Oct 2019 05:16:25 -0400
parents 81ed42c0721a
children 0bed5ee5b74a
line wrap: on
line diff
--- a/data_manager/data_manager_manual.xml	Wed Oct 16 03:19:50 2019 -0400
+++ b/data_manager/data_manager_manual.xml	Wed Oct 16 05:16:25 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_manual" name="Manual Data Manager" version="0.0.1" tool_type="manage_data">
+<tool id="data_manager_manual" name="Manual Data Manager" version="0.0.2" tool_type="manage_data" profile_version="19.01">
     <options sanitize="False" />
     <description>Entry Builder</description>
     <command detect_errors="exit_code"><![CDATA[
@@ -10,22 +10,22 @@
         <repeat name="data_tables" title="Data Table to define" min="1">
             <param name="data_table_name" type="select" multiple="False" optional="False" label="Choose Desired Data Table"
                 dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" refresh_on_change="True"/>
-        <repeat name="columns" title="Table Columns" min="1">
-            <param name="data_table_column_name" type="select" multiple="False" optional="False" label="Column Name"
-                dynamic_options="galaxy_code_get_available_data_table_columns( __trans__, data_table_name )" />
-            <!-- <param name="data_table_column_name" type="text" label="Column Name"/> -->
-            <param name="data_table_column_value" type="text" label="Value to use for data table column"/>
-            <conditional name="is_path">
-                <param name="is_path_selector" type="select" label="Value is a path">
-                    <option value="yes">Yes</option>
-                    <option value="no" selected="True">No</option>
-                </param>
-                <when value="yes">
-                    <param name="abspath" type="boolean" label="Apply abspath" checked="True" truevalue="abspath" falsevalue="" />
-                </when>
-                <when value="no"/>
-            </conditional>
-        </repeat>
+            <repeat name="columns" title="Table Columns" min="1">
+                <param name="data_table_column_name" type="select" multiple="False" optional="False" label="Column Name"
+                    dynamic_options="galaxy_code_get_available_data_table_columns( __trans__, data_table_name )" />
+                <!-- <param name="data_table_column_name" type="text" label="Column Name"/> -->
+                <param name="data_table_column_value" type="text" label="Value to use for data table column"/>
+                <conditional name="is_path">
+                    <param name="is_path_selector" type="select" label="Value is a path">
+                        <option value="yes">Yes</option>
+                        <option value="no" selected="True">No</option>
+                    </param>
+                    <when value="yes">
+                        <param name="abspath" type="boolean" label="Apply abspath" checked="True" truevalue="abspath" falsevalue="" />
+                    </when>
+                    <when value="no"/>
+                </conditional>
+            </repeat>
         </repeat>
         <repeat name="directory_content" title="Directory Content">
             <param name="subdir" type="text" label="Place in Subdirectory" value=""/>
@@ -58,6 +58,24 @@
         <data name="out_file" format="data_manager_json" dbkey="dbkey"/>
     </outputs>
     <tests>
+        <test>
+            <repeat name="data_tables">
+                <param name="data_table_name" value="__dbkeys__"/>
+                <repeat name="columns">
+                    <param name="data_table_column_name" value="value"/>
+                    <param name="data_table_column_value" value="dm6"/>
+                </repeat>
+                <repeat name="columns">
+                    <param name="data_table_column_name" value="name"/>
+                    <param name="data_table_column_value" value="Drosophila melanogaster genome release 6"/>
+                </repeat>
+                <repeat name="columns">
+                    <param name="data_table_column_name" value="len_path"/>
+                    <param name="data_table_column_value" value="dm6.len"/>
+                </repeat>
+            </repeat>
+            <output name="out_file" file="dm6.data_manager_json"/>
+        </test>
     </tests>
     <help>
 **What it does**