Mercurial > repos > iuc > data_manager_manual
view data_manager/data_manager_manual.xml @ 4:1ed87dee9e68 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_manual commit b775a4c6248f00430a9ab1b2a4e1afa255ac57a2"
author | iuc |
---|---|
date | Wed, 16 Oct 2019 05:16:25 -0400 |
parents | 81ed42c0721a |
children | 0bed5ee5b74a |
line wrap: on
line source
<tool id="data_manager_manual" name="Manual Data Manager" version="0.0.2" tool_type="manage_data" profile_version="19.01"> <options sanitize="False" /> <description>Entry Builder</description> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/data_manager_manual.py' '${out_file}' --galaxy_data_manager_data_path '${__app__.config.galaxy_data_manager_data_path}' ]]></command> <inputs> <repeat name="data_tables" title="Data Table to define" min="1"> <param name="data_table_name" type="select" multiple="False" optional="False" label="Choose Desired Data Table" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" refresh_on_change="True"/> <repeat name="columns" title="Table Columns" min="1"> <param name="data_table_column_name" type="select" multiple="False" optional="False" label="Column Name" dynamic_options="galaxy_code_get_available_data_table_columns( __trans__, data_table_name )" /> <!-- <param name="data_table_column_name" type="text" label="Column Name"/> --> <param name="data_table_column_value" type="text" label="Value to use for data table column"/> <conditional name="is_path"> <param name="is_path_selector" type="select" label="Value is a path"> <option value="yes">Yes</option> <option value="no" selected="True">No</option> </param> <when value="yes"> <param name="abspath" type="boolean" label="Apply abspath" checked="True" truevalue="abspath" falsevalue="" /> </when> <when value="no"/> </conditional> </repeat> </repeat> <repeat name="directory_content" title="Directory Content"> <param name="subdir" type="text" label="Place in Subdirectory" value=""/> <conditional name="file_source"> <param name="file_source_selector" type="select" label="File Content Source"> <option value="history">History Item</option> <option value="URL" selected="True">URL</option> </param> <when value="history"> <param name="file_history" type="data" multiple="false" optional="false" format="data" label="File from history" /> </when> <when value="URL"> <param name="file_URL" type="text" label="Fetch from URL" value=""/> </when> </conditional> <conditional name="file_action"> <param name="file_action_selector" type="select" label="File Actions"> <option value="unpack">Extract Archive</option> <option value="None" selected="True">None</option> </param> <when value="None"> <param name="filename_override" type="text" label="Override with Filename" value=""/> </when> <when value="unpack"> </when> </conditional> </repeat> </inputs> <outputs> <data name="out_file" format="data_manager_json" dbkey="dbkey"/> </outputs> <tests> <test> <repeat name="data_tables"> <param name="data_table_name" value="__dbkeys__"/> <repeat name="columns"> <param name="data_table_column_name" value="value"/> <param name="data_table_column_value" value="dm6"/> </repeat> <repeat name="columns"> <param name="data_table_column_name" value="name"/> <param name="data_table_column_value" value="Drosophila melanogaster genome release 6"/> </repeat> <repeat name="columns"> <param name="data_table_column_name" value="len_path"/> <param name="data_table_column_value" value="dm6.len"/> </repeat> </repeat> <output name="out_file" file="dm6.data_manager_json"/> </test> </tests> <help> **What it does** This tool allows manually specifying data table entries and optionally providing filesystem contents. </help> <code file="data_manager_manual.py" /> </tool>