Mercurial > repos > iuc > data_manager_metaphlan2_database_downloader
view data_manager/data_manager_metaphlan2_download.xml @ 0:9c4ad82be5bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
author | iuc |
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date | Sat, 04 Mar 2017 12:11:20 -0500 |
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<tool id="data_manager_metaphlan2_download" name="MetaPhlAn2 download" version="2.6.0" tool_type="manage_data"> <description>Download MetaPhlAn2 database</description> <requirements> <requirement type="package" version="2.6.0">metaphlan2</requirement> </requirements> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> <command><![CDATA[ python '$__tool_directory__/data_manager_metaphlan2_download.py' --database $database '${out_file}' ]]></command> <inputs> <param name="database" type="select" label="Database to download"> <option value="db_v20" selected="true">MetaPhlAn2 clade-specific marker genes</option> </param> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> </tests> <help><![CDATA[ This tool downloads the MetaPhlAn2 databases. ]]></help> <citations> <citation type="doi">10.1371/journal.pcbi.1003153</citation> <yield /> </citations> </tool>