Mercurial > repos > iuc > data_manager_metaphlan_database_downloader

diff data_manager/data_manager_metaphlan_download.py @ 2:5fe20c915fa6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 57df6e8a0ffd145e560f7c7e20cfedbbe2ce01d2
author iuc
date Tue, 28 Mar 2023 18:54:12 +0000
parents 169b08c9713c
children
line wrap: on
line diff
--- a/data_manager/data_manager_metaphlan_download.py	Wed Apr 21 21:37:49 2021 +0000
+++ b/data_manager/data_manager_metaphlan_download.py	Tue Mar 28 18:54:12 2023 +0000
@@ -106,7 +106,8 @@
             dbkey=index,
             value='%s-%s' % (index, date.today().strftime("%d%m%Y")),
             name="MetaPhlAn clade-specific marker genes (%s)" % index,
-            path=str(db_dp)))
+            path=str(db_dp),
+            db_version='SGB' if 'SGB' in index else 'legacy'))
 
 
 if __name__ == "__main__":
@@ -129,14 +130,14 @@
 
     # Set up data tables dictionary
     data_tables = create_data_tables_dict()
-    add_data_table(data_tables, "metaphlan_database")
+    add_data_table(data_tables, "metaphlan_database_versioned")
 
     # Fetch data from specified data sources
     print("Download and build database")
     download_metaphlan_db(
         data_tables,
         args.index,
-        "metaphlan_database",
+        "metaphlan_database_versioned",
         target_dp)
 
     # Write output JSON