Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
view data_manager/data_manager_metaphlan_download.xml @ 4:0cb27ea69dc1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 09b56ef3e09ad6c5923c88616fea5cbd77d87616
author | iuc |
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date | Mon, 18 Dec 2023 09:36:36 +0000 |
parents | 4ba60cb14cb0 |
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<tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="22.05"> <description></description> <requirements> <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> </requirements> <macros> <token name="@TOOL_VERSION@">4.0.6</token> <token name="@VERSION_SUFFIX@">2</token> </macros> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> <exit_code range="1:" level="fatal" description="Error"/> </stdio> <command><![CDATA[ python '$__tool_directory__/data_manager_metaphlan_download.py' --index '$index' --json '$out_file' ]]></command> <inputs> <param name="index" type="select" label="Version"> <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">FULL: mpa_vOct22_CHOCOPhlAnSGB_202212</option> <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">FULL: mpa_vJan21_CHOCOPhlAnSGB_202103</option> <option value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103">DEMO: mpa_vJan21_TOY_CHOCOPhlAnSGB_202103</option> </param> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> <test expect_num_outputs="1"> <param name="index" value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103"/> <output name="out_file"> <assert_contents> <has_text text="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103"/> <has_text text="MetaPhlAn clade-specific marker genes (mpa_vJan21_TOY_CHOCOPhlAnSGB_202103)"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ This tool downloads and builds the MetaPhlAn databases. ]]></help> <citations> <citation type="doi">1101/2020.11.19.388223</citation> </citations> </tool>