Mercurial > repos > iuc > data_manager_mothur_toolsuite

diff data_manager/data_manager_fetch_mothur_reference_data.xml @ 4:0db22932bc39 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit f845716f6ac93500f143a30abef97eaba406344e"
author iuc
date Fri, 25 Jun 2021 09:37:05 +0000
parents 0e532fc0a0a6
children f21e77139fb5
line wrap: on
line diff
--- a/data_manager/data_manager_fetch_mothur_reference_data.xml	Sun Nov 22 12:51:44 2020 +0000
+++ b/data_manager/data_manager_fetch_mothur_reference_data.xml	Fri Jun 25 09:37:05 2021 +0000
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="data_manager_fetch_mothur_reference_data" name="Fetch Mothur toolsuite reference data" version="0.1.5" tool_type="manage_data" profile="19.05">
+<tool id="data_manager_fetch_mothur_reference_data" name="Fetch Mothur toolsuite reference data" version="0.2.1" tool_type="manage_data" profile="19.05">
     <description>Fetch and install reference data for Mothur</description>
     <requirements>
-        <requirement type="package" version="2.7">python</requirement>
+        <requirement type="package" version="3.8">python</requirement>
     </requirements>
     <command><![CDATA[
         python '$__tool_directory__/fetch_mothur_reference_data.py'
@@ -31,12 +31,14 @@
                     <option value="lookup_titanium">GS FLX Titanium lookup files</option>
                     <option value="lookup_gsflx">GSFLX lookup files</option>
                     <option value="lookup_gs20">GS20 lookup files</option>
+                    <option value="RDP_v18">RDP reference files (training set version 18)</option>
                     <option value="RDP_v16">RDP reference files (training set version 16)</option>
                     <option value="RDP_v14">RDP reference files (training set version 14)</option>
                     <option value="RDP_v10">RDP reference files (training set version 10)</option>
                     <option value="RDP_v9">RDP reference files (training set version 9)</option>
                     <option value="RDP_v7">RDP reference files (training set version 7)</option>
                     <option value="RDP_v6">RDP reference files (training set version 6)</option>
+                    <option value="silva_release_138.1">SILVA reference files (release 138.1)</option>
                     <option value="silva_release_128">SILVA reference files (release 128)</option>
                     <option value="silva_release_123">SILVA reference files (release 123)</option>
                     <option value="silva_release_119">SILVA reference files (release 119)</option>
@@ -93,6 +95,18 @@
             </output>
         </test>
         <test>
+            <param name="data_source|ref_data" value="RDP_v18"/>
+            <output name="out_file">
+                <assert_contents>
+                    <has_text text="16S rRNA RDP training set 18" />
+                    <has_text text="trainset18_062020.rdp.fasta" />
+                    <has_text text="trainset18_062020.rdp.tax" />
+                    <has_text text="trainset18_062020.pds.fasta" />
+                    <has_text text="trainset18_062020.pds.tax" />
+                </assert_contents>
+            </output>
+        </test>
+        <test>
             <param name="data_source|ref_data" value="RDP_v16"/>
             <output name="out_file">
                 <assert_contents>