Mercurial > repos > iuc > data_manager_mothur_toolsuite
diff data_manager/data_manager_fetch_mothur_reference_data.xml @ 4:0db22932bc39 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit f845716f6ac93500f143a30abef97eaba406344e"
author | iuc |
---|---|
date | Fri, 25 Jun 2021 09:37:05 +0000 |
parents | 0e532fc0a0a6 |
children | f21e77139fb5 |
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--- a/data_manager/data_manager_fetch_mothur_reference_data.xml Sun Nov 22 12:51:44 2020 +0000 +++ b/data_manager/data_manager_fetch_mothur_reference_data.xml Fri Jun 25 09:37:05 2021 +0000 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="data_manager_fetch_mothur_reference_data" name="Fetch Mothur toolsuite reference data" version="0.1.5" tool_type="manage_data" profile="19.05"> +<tool id="data_manager_fetch_mothur_reference_data" name="Fetch Mothur toolsuite reference data" version="0.2.1" tool_type="manage_data" profile="19.05"> <description>Fetch and install reference data for Mothur</description> <requirements> - <requirement type="package" version="2.7">python</requirement> + <requirement type="package" version="3.8">python</requirement> </requirements> <command><![CDATA[ python '$__tool_directory__/fetch_mothur_reference_data.py' @@ -31,12 +31,14 @@ <option value="lookup_titanium">GS FLX Titanium lookup files</option> <option value="lookup_gsflx">GSFLX lookup files</option> <option value="lookup_gs20">GS20 lookup files</option> + <option value="RDP_v18">RDP reference files (training set version 18)</option> <option value="RDP_v16">RDP reference files (training set version 16)</option> <option value="RDP_v14">RDP reference files (training set version 14)</option> <option value="RDP_v10">RDP reference files (training set version 10)</option> <option value="RDP_v9">RDP reference files (training set version 9)</option> <option value="RDP_v7">RDP reference files (training set version 7)</option> <option value="RDP_v6">RDP reference files (training set version 6)</option> + <option value="silva_release_138.1">SILVA reference files (release 138.1)</option> <option value="silva_release_128">SILVA reference files (release 128)</option> <option value="silva_release_123">SILVA reference files (release 123)</option> <option value="silva_release_119">SILVA reference files (release 119)</option> @@ -93,6 +95,18 @@ </output> </test> <test> + <param name="data_source|ref_data" value="RDP_v18"/> + <output name="out_file"> + <assert_contents> + <has_text text="16S rRNA RDP training set 18" /> + <has_text text="trainset18_062020.rdp.fasta" /> + <has_text text="trainset18_062020.rdp.tax" /> + <has_text text="trainset18_062020.pds.fasta" /> + <has_text text="trainset18_062020.pds.tax" /> + </assert_contents> + </output> + </test> + <test> <param name="data_source|ref_data" value="RDP_v16"/> <output name="out_file"> <assert_contents>