Mercurial > repos > iuc > data_manager_packaged_annotation_data
comparison tool-data/packaged_annotation_data.loc.sample @ 0:2a546f92b1ba draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_packaged_annotation_data commit 339a6c16fb6d944d4e147b5192cbeb0ebd26d18e"
| author | iuc |
|---|---|
| date | Tue, 04 Jan 2022 18:34:18 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:2a546f92b1ba |
|---|---|
| 1 #This file describes genome annotation data packages and their contents | |
| 2 #available on the server. | |
| 3 #Such data can consist of any number of individual files in a variety of | |
| 4 #formats (e.g., bed, vcf, tabular) describing any features with respect to the | |
| 5 #genome with the associated dbkey. | |
| 6 #The directory referenced in the <path> column of the table is expected to | |
| 7 #contain the file listed under <data_id> and a meta.yml file with details about | |
| 8 #the annotation package volume and all of its contents. | |
| 9 #This data table has the format (white space characters are TAB characters): | |
| 10 # | |
| 11 #<value> <dbkey> <data_name> <data_id> <data_format> <package_id> <package_name> <path> | |
| 12 # | |
| 13 #So, packaged_annotation_data.loc tables could look like this: | |
| 14 # | |
| 15 #dbSNP_hg19__1__1:dbSNP.tidy hg19 dbSNP tidy (b147.20160601, hg19; from dbSNP/vol:1/build:1) dbSNP.tidy vcf_bgzip dbSNP__hg19__1__1 dbSNP (hg19, vol:1/build:1) /path/to/packaged_annotation_data/hg19/dbSNP/1/1 | |
| 16 #Cancer_variant_data__1__1:hotspots.data hg19 CancerHotspots (v2, hg19; from Cancer variant data/vol:1/build:1) hotspots.data bed Cancer_variant_data__hg19__1__1 Cancer variant data (hg19, vol:1/build:1) /path/to/packaged_annotation_data/hg19/Cancer_variant_data/1/1 | |
| 17 #Cancer_genes_data__1__1:civic.genes hg19 CIViC genes (01-Feb-2019, hg19; from Cancer gene data/vol:1/build:1) civic.genes tabular Cancer_gene_data__hg19__1__1 Cancer gene data (hg19, vol:1/build:1) /path/to/packaged_annotation_data/hg19/Cancer_variant_data/1/1 | |
| 18 #SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1:ARTICv3 NC_045512.2 ARTIC (v3, NC_045512.2; from SARS-CoV-2 amplicon primer sets/vol:1/build:1) ARTICv3 bed6 SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1 SARS-CoV-2 amplicon primer sets (NC_045512.2, vol:1/build:1) /path/to/packaged_annotation_data/NC_045512.2/SARS-CoV-2_amplicon_primer_sets/1/1 | |
| 19 #SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1:ARTICv4 NC_045512.2 ARTIC (v4, NC_045512.2; from SARS-CoV-2 amplicon primer sets/vol:1/build:1) ARTICv4 bed6 SARS-CoV-2_amplicon_primer_sets__NC_045512.2__1__1 SARS-CoV-2 amplicon primer sets (NC_045512.2, vol:1/build:1) /path/to/packaged_annotation_data/NC_045512.2/SARS-CoV-2_amplicon_primer_sets/1/1 | |
| 20 # |