Mercurial > repos > iuc > data_manager_pangolearn

comparison data_manager/pangolearn_dm.xml @ 4:6e24e79d3d69 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_pangolearn commit fd2566abd51c88847437d38a5abea8703b8ee034"
author iuc
date Tue, 05 Apr 2022 18:40:07 +0000
parents df30a2f1db55
children 29c738066906
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3:df30a2f1db55 4:6e24e79d3d69
1 <tool id="data_manager_pangolearn" name="PANGOlearn data manager" version="0.0.3" tool_type="manage_data" profile="20.01"> 1 <tool id="data_manager_pangolearn" name="PANGOlearn data manager" version="0.0.3+galaxy1" tool_type="manage_data" profile="20.01">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="3.8">python</requirement> 3 <requirement type="package" version="3.8">python</requirement>
4 <requirement type="package" version="2.24.0">requests</requirement> 4 <requirement type="package" version="2.24.0">requests</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
13 #end if 13 #end if
14 #if str($release.end_date).strip() != "" 14 #if str($release.end_date).strip() != ""
15 --end_date '$release.end_date' 15 --end_date '$release.end_date'
16 #end if 16 #end if
17 #end if 17 #end if
18 'pangolearn' 18 'pangolearn'
19 '${output_file}' 19 '${output_file}'
20 ]]></command> 20 ]]></command>
21 <inputs> 21 <inputs>
22 <conditional name="release"> 22 <conditional name="release">
23 <param name="which" type="select" label="Select PANGOlearn release"> 23 <param name="which" type="select" label="Select PANGOlearn release">
50 <output name="output_file"> 50 <output name="output_file">
51 <assert_contents> 51 <assert_contents>
52 <has_text text="pangoLEARN data release 2021-04-01"/> 52 <has_text text="pangoLEARN data release 2021-04-01"/>
53 <has_text text='"format_version": "1.0"'/> 53 <has_text text='"format_version": "1.0"'/>
54 </assert_contents> 54 </assert_contents>
55 </output> 55 </output>
56 </test> 56 </test>
57 <test> 57 <test>
58 <conditional name="release"> 58 <conditional name="release">
59 <param name="which" value="date_range" /> 59 <param name="which" value="date_range" />
60 <param name="start_date" value="2021-05-27" /> 60 <param name="start_date" value="2021-05-27" />
62 </conditional> 62 </conditional>
63 <output name="output_file"> 63 <output name="output_file">
64 <assert_contents> 64 <assert_contents>
65 <has_text text='"format_version": "3.0"'/> 65 <has_text text='"format_version": "3.0"'/>
66 </assert_contents> 66 </assert_contents>
67 </output> 67 </output>
68 </test> 68 </test>
69 </tests> 69 </tests>
70 <help><![CDATA[ 70 <help><![CDATA[
71 This data managers fetches models (from the pangoLEARN_ repository) for the pangolin_ 71 This data managers fetches models (from the pangoLEARN_ repository) for the pangolin_
72 SARS-CoV-2 lineage typing tool and updates the pangolearn data table. 72 SARS-CoV-2 lineage typing tool and updates the pangolearn data table.
73 73