Mercurial > repos > iuc > data_manager_primer_scheme_bedfiles

comparison data_manager/install_primer_scheme_bedfiles.xml @ 3:a2953ef09fe1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 1e0936cb95a0318809b3306fad43ce444d7682b0"
author iuc
date Mon, 12 Oct 2020 13:47:03 +0000
parents b3710e492ee4
children be70da9dc013
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2:b3710e492ee4 3:a2953ef09fe1
1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.11" tool_type="manage_data" profile="19.05"> 1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.12" tool_type="manage_data" profile="19.05">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="2.24.0">requests</requirement> 3 <requirement type="package" version="2.24.0">requests</requirement>
4 </requirements> 4 </requirements>
5 <!-- fetch all the primers in one go --> 5 <!-- fetch all the primers in one go -->
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
59 </assert_contents> 59 </assert_contents>
60 </output> 60 </output>
61 </test> 61 </test>
62 </tests> 62 </tests>
63 <help><![CDATA[ 63 <help><![CDATA[
64 Amplicon sequencing for viral pathogens using the `PrimalSeq and iVar`_ relies on 64 Amplicon sequencing for viral pathogens using the ARTIC_ pipeline or `PrimalSeq and iVar`_ relies on
65 identifying primer locations in a reference sequence using BED format files. This 65 identifying primer locations in a reference sequence using BED format files. This
66 data manager populates a Galaxy tool data table, either from files provided via 66 data manager populates a Galaxy tool data table, either from files provided via
67 a history or via the ARTIC_ network Github repository. 67 a history or via the ARTIC_ network Github repository.
68 68
69 .. _PrimalSeq and iVar: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1618-7 69 .. _PrimalSeq and iVar: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1618-7