Mercurial > repos > iuc > data_manager_primer_scheme_bedfiles
comparison data_manager/install_primer_scheme_bedfiles.xml @ 2:b3710e492ee4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"
author | iuc |
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date | Mon, 22 Jun 2020 18:26:10 -0400 |
parents | cce5d9327cd6 |
children | a2953ef09fe1 |
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1:cce5d9327cd6 | 2:b3710e492ee4 |
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1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.10" tool_type="manage_data" profile="19.05"> | 1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.11" tool_type="manage_data" profile="19.05"> |
2 <requirements> | 2 <requirements> |
3 <requirement type="package">python</requirement> | 3 <requirement type="package" version="2.24.0">requests</requirement> |
4 <requirement type="package" version="2.22.0">requests</requirement> | |
5 </requirements> | 4 </requirements> |
6 <!-- fetch all the primers in one go --> | 5 <!-- fetch all the primers in one go --> |
7 <command detect_errors="exit_code"> | 6 <command detect_errors="exit_code"> |
8 python '$__tool_directory__/install_primer_scheme_bedfiles.py' | 7 python '$__tool_directory__/install_primer_scheme_bedfiles.py' |
9 '${output_file}' | 8 '${output_file}' |
59 <has_text text="sample_primer"/> | 58 <has_text text="sample_primer"/> |
60 </assert_contents> | 59 </assert_contents> |
61 </output> | 60 </output> |
62 </test> | 61 </test> |
63 </tests> | 62 </tests> |
63 <help><![CDATA[ | |
64 Amplicon sequencing for viral pathogens using the `PrimalSeq and iVar`_ relies on | |
65 identifying primer locations in a reference sequence using BED format files. This | |
66 data manager populates a Galaxy tool data table, either from files provided via | |
67 a history or via the ARTIC_ network Github repository. | |
68 | |
69 .. _PrimalSeq and iVar: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1618-7 | |
70 .. _ARTIC: https://artic.network/ | |
71 ]]></help> | |
72 <citations> | |
73 <citation type="doi">10.1186/s13059-018-1618-7</citation> | |
74 </citations> | |
64 </tool> | 75 </tool> |