annotate data_manager_conf.xml @ 2:cbe065fbd038 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4a3c9f195ba5d899b1a1ce5e80281cdf230f456a
author iuc
date Mon, 23 Oct 2017 13:26:03 -0400
parents f8608fddfb23
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
2 <data_managers>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
3 <data_manager tool_file="data_manager/data_manager_qiime_download.xml" id="data_manager_qiime_download" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
4 <data_table name="qiime_rep_set"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
5 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
9 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
10 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
11 <source>${path}</source>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
13 </move>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
16 </column>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
17 </output>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
18 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
19 <data_table name="qiime_rep_set_aligned"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
20 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
23 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
24 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
25 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
26 <source>${path}</source>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set_aligned/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
28 </move>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set_aligned/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
30 <value_translation type="function">abspath</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
31 </column>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
32 </output>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
33 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
34 <data_table name="qiime_taxonomy"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
35 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
36 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
37 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
38 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
39 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
40 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
41 <source>${path}</source>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_taxonomy/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
43 </move>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_taxonomy/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
45 <value_translation type="function">abspath</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
46 </column>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
47 </output>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
48 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
49 <data_table name="qiime_trees"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
50 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
51 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
52 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
53 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
54 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
55 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
56 <source>${path}</source>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
57 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_trees/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
58 </move>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
59 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_trees/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
60 <value_translation type="function">abspath</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
61 </column>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
62 </output>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
63 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
64 </data_manager>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
parents:
diff changeset
65 </data_managers>