Mercurial > repos > iuc > data_manager_qiime_database_downloader
view data_manager_conf.xml @ 3:cc18f0f3514c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author | iuc |
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date | Sun, 22 Nov 2020 12:53:09 +0000 |
parents | f8608fddfb23 |
children |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/data_manager_qiime_download.xml" id="data_manager_qiime_download" > <data_table name="qiime_rep_set"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="file"> <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set/${dbkey}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set/${dbkey}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="qiime_rep_set_aligned"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="file"> <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set_aligned/${dbkey}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set_aligned/${dbkey}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="qiime_taxonomy"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="file"> <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_taxonomy/${dbkey}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_taxonomy/${dbkey}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="qiime_trees"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="file"> <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_trees/${dbkey}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_trees/${dbkey}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>