Mercurial > repos > iuc > data_manager_salmon_index_builder

diff data_manager/salmon_index_builder.py @ 3:6437fc47878f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_salmon_index_builder commit 5f199df1a4ce3c569c3778e3eb67019fc1b0c8db"
author iuc
date Sun, 27 Sep 2020 09:03:26 +0000
parents 7d4fd734b078
children
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line diff
--- a/data_manager/salmon_index_builder.py	Thu Nov 28 15:48:04 2019 -0500
+++ b/data_manager/salmon_index_builder.py	Sun Sep 27 09:03:26 2020 +0000
@@ -27,7 +27,7 @@
 
 def build_salmon_index(data_manager_dict, options, params, sequence_id, sequence_name):
     data_table_name = options.data_table_name or DEFAULT_DATA_TABLE_NAME
-    target_directory = params['output_data' ][0]['extra_files_path']
+    target_directory = params['output_data'][0]['extra_files_path']
     if not os.path.exists(target_directory):
         os.mkdir(target_directory)
     args = ['salmon', 'index']