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comparison data_manager/data_manager_semibin.xml @ 0:676915c44e1e draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_semibin commit aa9bfb2fb62547ee8bac34f0de5b3beaa0bfd1a4"
author iuc
date Fri, 14 Oct 2022 21:32:55 +0000
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-1:000000000000 0:676915c44e1e
1 <tool id="data_manager_semibin" name="Download reference genomes (GTDB) for SemiBin" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description></description>
3 <requirements>
4 <requirement type="package" version="@TOOL_VERSION@">semibin</requirement>
5 </requirements>
6 <macros>
7 <token name="@TOOL_VERSION@">1.1.1</token>
8 <token name="@VERSION_SUFFIX@">0</token>
9 <token name="@PROFILE@">21.01</token>
10 </macros>
11 <command detect_errors="exit_code"><![CDATA[
12 python '$__tool_directory__/data_manager_semibin.py'
13 --json '$out_file'
14 $type
15 ]]></command>
16 <inputs>
17 <param name="type" type="hidden" value="" />
18 </inputs>
19 <outputs>
20 <data name="out_file" format="data_manager_json"/>
21 </outputs>
22 <tests>
23 <test expect_num_outputs="1">
24 <param name="type" value="--test" />
25 <output name="out_file">
26 <assert_contents>
27 <has_text text="test"/>
28 <has_text text="Test"/>
29 </assert_contents>
30 </output>
31 </test>
32 </tests>
33 <help><![CDATA[
34 This tool downloads reference genomes (GTDB) for SemiBin
35 ]]></help>
36 <citations>
37 <citation type="doi">10.1038/s41467-022-29843-y</citation>
38 </citations>
39 </tool>