Mercurial > repos > iuc > data_manager_snpeff

comparison data_manager/data_manager_snpEff_databases.xml @ 9:08d7998c3afb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 036feef4f46b5aedabc5080c8fa4bc00d9c30d95"
author iuc
date Wed, 12 Feb 2020 18:33:53 -0500
parents a6400027d849
children
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8:d107d20dc6bd 9:08d7998c3afb
1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.3r" tool_type="manage_data"> 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.3.1t" tool_type="manage_data" profile="18.09">
2 <description>Read the list of available SnpEff databases</description> 2 <description>Read the list of available SnpEff databases</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.3.1r">snpeff</requirement> 4 <requirement type="package" version="4.3.1t">snpeff</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/data_manager_snpEff_databases.py' '$out_file' 7 python '$__tool_directory__/data_manager_snpEff_databases.py' '$out_file'
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
14 <tests> 14 <tests>
15 <test> 15 <test>
16 <output name="out_file"> 16 <output name="out_file">
17 <assert_contents> 17 <assert_contents>
18 <!-- Check that a genome was added --> 18 <!-- Check that a genome was added -->
19 <has_text text="GRCh38.76" /> 19 <has_text text="GRCh38.86" />
20 </assert_contents> 20 </assert_contents>
21 </output> 21 </output>
22 </test> 22 </test>
23 </tests> 23 </tests>
24 <help><![CDATA[ 24 <help><![CDATA[