Mercurial > repos > iuc > data_manager_snpeff

comparison data_manager/data_manager_snpEff_download.xml @ 9:08d7998c3afb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 036feef4f46b5aedabc5080c8fa4bc00d9c30d95"
author iuc
date Wed, 12 Feb 2020 18:33:53 -0500
parents a6400027d849
children
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8:d107d20dc6bd 9:08d7998c3afb
1 <tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.3r" tool_type="manage_data"> 1 <tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.3.1t" tool_type="manage_data" profile="18.09">
2 <description>Download a new database</description> 2 <description>Download a new database</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.3.1r">snpeff</requirement> 4 <requirement type="package" version="4.3.1t">snpeff</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/data_manager_snpEff_download.py' 7 python '$__tool_directory__/data_manager_snpEff_download.py'
8 --genome_version '$genome_version' 8 --genome_version '$genome_version'
9 '$out_file' 9 '$out_file'
17 <outputs> 17 <outputs>
18 <data name="out_file" format="data_manager_json" label="${tool.name}"/> 18 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
19 </outputs> 19 </outputs>
20 <tests> 20 <tests>
21 <test> 21 <test>
22 <param name="genome_version" value="GRCh38.76"/> 22 <param name="genome_version" value="GRCh38.86"/>
23 <output name="out_file"> 23 <output name="out_file">
24 <assert_contents> 24 <assert_contents>
25 <!-- Check that a genome was added --> 25 <!-- Check that a genome was added -->
26 <has_text text="GRCh38.76" /> 26 <has_text text="GRCh38.86" />
27 <has_text text="snpeffv_regulationdb" /> 27 <has_text text="snpeffv_regulationdb" />
28 </assert_contents> 28 </assert_contents>
29 </output> 29 </output>
30 </test> 30 </test>
31 </tests> 31 </tests>