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comparison data_manager/data_manager_snpEff_databases.xml @ 12:617d95d798fa draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_snpeff commit 5ed67056af2b7289fcf89e96c34afe11fa39bbdf
author iuc
date Tue, 10 Mar 2026 10:12:26 +0000
parents 08d7998c3afb
children
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11:def511e8e005 12:617d95d798fa
1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.3.1t" tool_type="manage_data" profile="18.09"> 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="5.4.0c" tool_type="manage_data" profile="24.2">
2 <description>Read the list of available SnpEff databases</description> 2 <description>Read the list of available SnpEff databases</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.3.1t">snpeff</requirement> 4 <requirement type="package" version="5.4.0c">snpeff</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/data_manager_snpEff_databases.py' '$out_file' 7 python '$__tool_directory__/data_manager_snpEff_databases.py' '$out_file'
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
23 </tests> 23 </tests>
24 <help><![CDATA[ 24 <help><![CDATA[
25 This tool updates the list of SnpEff databases for the SnpEff Download data manager. 25 This tool updates the list of SnpEff databases for the SnpEff Download data manager.
26 It should only need to be run once for a SnpEff version, since it populates the SnpEff Download data manager from the SnpEff config file. 26 It should only need to be run once for a SnpEff version, since it populates the SnpEff Download data manager from the SnpEff config file.
27 27
28 For information about SnpEff: http://snpeff.sourceforge.net 28 For information about SnpEff and its databases see: https://pcingola.github.io/SnpEff/snpeff/introduction/#databases.
29 ]]></help> 29 ]]></help>
30 <citations> 30 <citations>
31 <citation type="doi">10.4161/fly.19695</citation> 31 <citation type="doi">10.4161/fly.19695</citation>
32 </citations> 32 </citations>
33 </tool> 33 </tool>