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view data_manager_conf.xml @ 5:3d9dd4b9fb09 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1-dirty
author iuc
date Tue, 18 Apr 2017 09:40:03 -0400
parents 984733fcab49
children a6400027d849
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<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" >
    <data_table name="snpeffv_databases">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" >
    <data_table name="snpeffv_genomedb">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="path" output_ref="out_file" >
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/v4_3/data</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/v4_3/data</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="snpeffv_regulationdb">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
      </output>
    </data_table>
    <data_table name="snpeffv_annotations">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
      </output>
    </data_table>
  </data_manager>
</data_managers>