Mercurial > repos > iuc > data_manager_snpeff
view data_manager_conf.xml @ 0:9ac823a8b328 draft
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author | iuc |
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date | Thu, 22 Jan 2015 09:14:50 -0500 |
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children | 984733fcab49 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" > <data_table name="snpeffv_databases"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> </output> </data_table> </data_manager> <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" > <data_table name="snpeffv_genomedb"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="directory" relativize_symlinks="True"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/v4_0/data</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/v4_0/data</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="snpeffv_regulationdb"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> </output> </data_table> <data_table name="snpeffv_annotations"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> </output> </data_table> </data_manager> </data_managers>