Mercurial > repos > iuc > data_manager_star_index_builder
comparison data_manager/macros.xml @ 1:cdc4d8a998e1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
| author | iuc |
|---|---|
| date | Fri, 21 Apr 2017 12:36:31 -0400 |
| parents | |
| children | 6ef6520f14fc |
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| 0:e4b87a00b1df | 1:cdc4d8a998e1 |
|---|---|
| 1 <macros> | |
| 2 <xml name="requirements"> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="2.5.2b">star</requirement> | |
| 5 <requirement type="package" version="0.1.19">samtools</requirement> | |
| 6 </requirements> | |
| 7 </xml> | |
| 8 <token name="@FASTQ_GZ_OPTION@"> | |
| 9 --readFilesCommand zcat | |
| 10 </token> | |
| 11 <xml name="citations"> | |
| 12 <citations> | |
| 13 <citation type="doi">10.1093/bioinformatics/bts635</citation> | |
| 14 </citations> | |
| 15 </xml> | |
| 16 <xml name="@SJDBOPTIONS@"> | |
| 17 <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/> | |
| 18 <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/> | |
| 19 </xml> | |
| 20 </macros> |