Mercurial > repos > iuc > data_manager_star_index_builder

comparison tool-data/rnastar_index2.loc.sample @ 2:f537d3e00eb8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 811025ef8d9f60f4b02d66f7218127669fb42e0b
author iuc
date Fri, 23 Jun 2017 04:26:07 -0400
parents cdc4d8a998e1
children
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1:cdc4d8a998e1 2:f537d3e00eb8
3 #need to create these data files and then create a rnastar_index2.loc 3 #need to create these data files and then create a rnastar_index2.loc
4 #file similar to this one (store it in this directory) that points to 4 #file similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The rnastar_index2.loc 5 #the directories in which those files are stored. The rnastar_index2.loc
6 #file has this format (longer white space characters are TAB characters): 6 #file has this format (longer white space characters are TAB characters):
7 # 7 #
8 #<unique_build_id> <dbkey> <display_name> <file_base_path> <withGTF> 8 #<unique_build_id> <dbkey> <display_name> <file_base_path> <with-gtf>
9 # 9 #
10 #The <with_gtf> column should be 1 or 0, indicating whether the index was made 10 #The <with-gtf> column should be 1 or 0, indicating whether the index was made
11 #with an annotation (i.e., --sjdbGTFfile and --sjdbOverhang were used) or not, 11 #with an annotation (i.e., --sjdbGTFfile and --sjdbOverhang were used) or not,
12 #respecively. 12 #respecively.
13 # 13 #
14 #Note that STAR indices can become quite large. Consequently, it is only 14 #Note that STAR indices can become quite large. Consequently, it is only
15 #advisable to create indices with annotations if it's known ahead of time that 15 #advisable to create indices with annotations if it's known ahead of time that