Mercurial > repos > iuc > data_manager_star_index_builder

diff data_manager_conf.xml @ 5:f5eb9afa8f8a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 9b68f6ae375aed38493f8399b8572347c750336d
author iuc
date Thu, 15 Aug 2019 11:30:16 -0400
parents f537d3e00eb8
children 64deddb6a8ec
line wrap: on
line diff
--- a/data_manager_conf.xml	Wed Jul 18 13:26:12 2018 -0400
+++ b/data_manager_conf.xml	Thu Aug 15 11:30:16 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <data_managers>
-    <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3">
-        <data_table name="rnastar_index2">
+    <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder">
+        <data_table name="rnastar_index2_versioned">
             <output>
                 <column name="value" />
                 <column name="dbkey" />
@@ -12,12 +12,13 @@
                             out_file.extra_files_path is used as base by default
                             if no source, eg for type=directory, then refers to base 
                         -->
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
-                <column name="with-gtf" />
+                <column name="with_gene_model" />
+                <column name="version" />
             </output>
         </data_table>
     </data_manager>