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view data_manager/macros.xml @ 2:f537d3e00eb8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 811025ef8d9f60f4b02d66f7218127669fb42e0b
author iuc
date Fri, 23 Jun 2017 04:26:07 -0400
parents cdc4d8a998e1
children 6ef6520f14fc
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<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="2.5.2b">star</requirement>
            <requirement type="package" version="0.1.19">samtools</requirement>
        </requirements>
    </xml>
    <token name="@FASTQ_GZ_OPTION@">
        --readFilesCommand zcat
    </token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bts635</citation>
        </citations>
    </xml>
    <xml name="@SJDBOPTIONS@">
         <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/>
         <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/>
    </xml>
</macros>