Mercurial > repos > iuc > data_manager_vep_cache_downloader

annotate data_manager_conf.xml @ 0:1439dface5bf draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
author iuc
date Wed, 11 May 2022 13:03:06 +0000
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1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
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1 <?xml version="1.0"?>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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2 <data_managers>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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3 <data_manager tool_file="data_manager/data_manager_vep_cache_download.xml" id="data_manager_vep_cache_download" >
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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4 <data_table name="vep_versioned_annotation_cache"> <!-- Defines a Data Table to be modified. -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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5 <output> <!-- Handle the output of the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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8 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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9 <column name="cachetype" /> <!-- columns that are going to be specified by the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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10 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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11 <column name="species" /> <!-- columns that are going to be specified by the Data Manager Tool -->
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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12 <column name="path" output_ref="out_file" >
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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13 <move type="directory" relativize_symlinks="True">
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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14 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">vep/${version}/${dbkey}/${cachetype}</target>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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15 </move>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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16 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/vep/${version}/${dbkey}/${cachetype}/</value_translation>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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17 <value_translation type="function">abspath</value_translation>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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18 </column>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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19 </output>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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20 </data_table>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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21 </data_manager>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
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22 </data_managers>