Mercurial > repos > iuc > data_manager_vsnp_excel

annotate data_manager/vsnp_excel_fetcher.xml @ 1:b819e969b5d9 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:55:17 +0000
parents 25811bd45c44
children
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
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1 <?xml version="1.0"?>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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2 <tool id="vsnp_excel_fetcher" name="vSNP Excel data manager" tool_type="manage_data" profile="18.09" version="0.0.8">
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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3 <description>Download vSNP Excel files</description>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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4 <requirements>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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5 <requirement type="package" version="3.7">python</requirement>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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6 </requirements>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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7 <command detect_errors="exit_code"><![CDATA[
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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8 python '$__tool_directory__/vsnp_excel_fetcher.py'
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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9 --dbkey '${all_fasta_source.fields.dbkey}'
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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10 --name '${all_fasta_source.fields.name}'
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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11 --out_file '$out_file'
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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12 --url '$url'
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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13 ]]>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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14 </command>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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15 <inputs>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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16 <param name="all_fasta_source" type="select" label="FASTA reference">
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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17 <options from_data_table="all_fasta"/>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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18 </param>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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19 <param name="url" type="text" value="" label="URL to download the Excel file associated with the selected FASTA reference" optional="False" />
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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20 </inputs>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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21 <outputs>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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22 <data name="out_file" format="data_manager_json" />
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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23 </outputs>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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24 <tests>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25 <test>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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26 <param name="all_fasta_source" value="AF2122"/>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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27 <param name="url" value="https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_AF2122/Mbovis_define_filter.xlsx"/>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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28 <output name="out_file" value="vsnp_excel.json" compare="contains"/>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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29 </test>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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30 </tests>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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31 <help><![CDATA[
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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32 This tool fetches a vSNP Excel file associated with each supported genome reference to populate the vsnp_excel data table. The dbkey and name fields
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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33 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP Excel files are available in GitHub
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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34 at https://github.com/USDA-VS/vSNP_reference_options.
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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36 * **Mycobacterium bovis AF2122/97**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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38 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_AF2122/Mbovis_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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40 * **Brucella abortus bv. 1 str. 9-941**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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42 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_abortus1/Bab1_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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44 * **Brucella abortus strain BER**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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46 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_abortus3/Bab3_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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48 * **Brucella canis ATCC 23365**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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50 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_canis/Bcanis_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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52 * **Brucella ceti TE10759-12**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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54 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_ceti2/Bceti2_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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56 * **Brucella melitensis bv. 1 str. 16M**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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58 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv1/Bmelbv1_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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60 * **Brucella melitensis bv. 3 str. Ether**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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62 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv3/Bmelbv3_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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64 * **Brucella melitensis BwIM_SOM_36b**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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66 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv1b/Bmelbv1b_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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68 * **Brucella melitensis ATCC 23457**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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70 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_melitensis-bv2/Bmelbv2_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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72 * **Brucella ovis ATCC 25840**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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74 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_ovis/B_ovis_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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76 * **Brucella suis 1330**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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78 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_suis1/Bsuis1_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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80 * **Mycobacterium tuberculosis H37Rv**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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81
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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82 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_H37/H37_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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83
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
84 * **Mycobacterium avium subsp. paratuberculosis strain Telford**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
85
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
86 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/para-CP033688/CP033688_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
87
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
88 * **Mycobacterium avium subsp. paratuberculosis K-10**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
89
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
90 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/para-NC002944/NC_002944_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
91
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
92 * **Brucella suis ATCC 23445**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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93
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
94 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_suis2/Bsuis2_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
95
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
diff changeset
96 * **Brucella suis bv. 3 str. 686**
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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97
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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98 * **Excel file** https://github.com/USDA-VS/vSNP_reference_options/raw/master/Brucella_suis3/Bsuis3_define_filter.xlsx
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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99
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
parents:
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100 ]]></help>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
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101 <citations>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
iuc
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102 </citations>
25811bd45c44 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_excel commit 28873701c097a136c789024151e2fb59fa1091cd"
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103 </tool>