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comparison datamash-ops.xml @ 2:562f3c677828 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author iuc
date Fri, 07 Sep 2018 10:58:27 -0400
parents 2f3c6f2dcf39
children 419027d822d6
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1:2f3c6f2dcf39 2:562f3c677828
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="datamash_ops" name="Datamash" version="1.0.6"> 2 <tool id="datamash_ops" name="Datamash" version="@WRAPPER_VERSION@">
3 <description>(operations on tabular data)</description> 3 <description>(operations on tabular data)</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
19 #end if 19 #end if
20 #for $oper in $operations 20 #for $oper in $operations
21 ${oper.op_name} 21 ${oper.op_name}
22 ${oper.op_column} 22 ${oper.op_column}
23 #end for 23 #end for
24 < $in_file > $out_file 24 < $in_file > '$out_file'
25 ]]> 25 ]]>
26 </command> 26 </command>
27 <expand macro="inputs_outputs"> 27 <expand macro="inputs_outputs">
28 <param help="Example: to group by the first and fourth fields, use 1,4." label="Group by fields" name="grouping" type="text"> 28 <param help="Example: to group by the first and fourth fields, use 1,4." label="Group by fields" name="grouping" type="text">
29 <validator message="Invalid value in field. Allowed values are 0-9, space, comma." type="regex">^[0-9, ]*$</validator> 29 <validator message="Invalid value in field. Allowed values are 0-9, space, comma." type="regex">^[0-9, ]*$</validator>
54 <option value="sskew">Skewness (sample)</option> 54 <option value="sskew">Skewness (sample)</option>
55 <option value="pskew">Skewness (population)</option> 55 <option value="pskew">Skewness (population)</option>
56 <option value="skurt">Kurtosis (sample)</option> 56 <option value="skurt">Kurtosis (sample)</option>
57 <option value="pkurt">Kurtosis (population)</option> 57 <option value="pkurt">Kurtosis (population)</option>
58 <option value="jarque">Jarque-Bera Normality test</option> 58 <option value="jarque">Jarque-Bera Normality test</option>
59 <option value="dpo">DAgostino-Pearson Omnibus Normality Test</option> 59 <option value="dpo">D Agostino-Pearson Omnibus Normality Test</option>
60 <option value="mode">Mode</option> 60 <option value="mode">Mode</option>
61 <option value="antimode">Anti-Mode</option> 61 <option value="antimode">Anti-Mode</option>
62 <option value="rand">One random value from the group</option>
62 <option value="unique">Combine all unique values</option> 63 <option value="unique">Combine all unique values</option>
63 <option value="collapse">Combine all values</option> 64 <option value="collapse">Combine all values</option>
64 <option value="countunique">Count Unique values</option> 65 <option value="countunique">Count Unique values</option>
65 </param> 66 </param>
66 <param name="op_column" data_ref="in_file" label="On column" type="data_column" /> 67 <param name="op_column" data_ref="in_file" label="On column" type="data_column" />
77 <param name="ignore_case" value="false" /> 78 <param name="ignore_case" value="false" />
78 <repeat name="operations"> 79 <repeat name="operations">
79 <param name="op_name" value="sum" /> 80 <param name="op_name" value="sum" />
80 <param name="op_column" value="3" /> 81 <param name="op_column" value="3" />
81 </repeat> 82 </repeat>
82 <output file="group_compute_output.txt" name="out_file" ftpye="tabular" /> 83 <output file="group_compute_output.txt" name="out_file" ftype="tabular" />
83 </test> 84 </test>
84 </tests> 85 </tests>
85 <help> 86 <help>
86 <![CDATA[ 87 <![CDATA[
87 @HELP_HEADER@ 88 @HELP_HEADER@