Mercurial > repos > iuc > datamash_ops

comparison datamash-ops.xml @ 4:746e8e4bf929 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 384736acb5d2ae31d796c53031fad0e5da5424e3
author iuc
date Fri, 01 Jul 2022 16:18:07 +0000
parents 419027d822d6
children 4c07ddedc198
comparison
equal deleted inserted replaced
3:419027d822d6 4:746e8e4bf929
11 $header_in 11 $header_in
12 $header_out 12 $header_out
13 $need_sort 13 $need_sort
14 $print_full_line 14 $print_full_line
15 $ignore_case 15 $ignore_case
16 $narm
16 @FIELD_SEPARATOR@ 17 @FIELD_SEPARATOR@
17 #if str($grouping) != '' 18 #if str($grouping) != ''
18 --group '$grouping' 19 --group '$grouping'
19 #end if 20 #end if
20 #for $oper in $operations 21 #for $oper in $operations
39 <param argument="--sort" name="need_sort" type="boolean" truevalue="--sort" falsevalue="" label="Sort input" help="Input file must be sorted by the grouping columns. Enable this option to automatically sort the input."/> 40 <param argument="--sort" name="need_sort" type="boolean" truevalue="--sort" falsevalue="" label="Sort input" help="Input file must be sorted by the grouping columns. Enable this option to automatically sort the input."/>
40 <param argument="--header-in" type="boolean" truevalue="--header-in" falsevalue="" label="Input file has a header line" /> 41 <param argument="--header-in" type="boolean" truevalue="--header-in" falsevalue="" label="Input file has a header line" />
41 <param argument="--header-out" type="boolean" truevalue="--header-out" falsevalue="" label="Print header line" /> 42 <param argument="--header-out" type="boolean" truevalue="--header-out" falsevalue="" label="Print header line" />
42 <param argument="--full" name="print_full_line" type="boolean" truevalue="--full" falsevalue="" label="Print all fields from input file" /> 43 <param argument="--full" name="print_full_line" type="boolean" truevalue="--full" falsevalue="" label="Print all fields from input file" />
43 <param argument="--ignore-case" type="boolean" truevalue="--ignore-case" falsevalue="" label="Ignore case when grouping" /> 44 <param argument="--ignore-case" type="boolean" truevalue="--ignore-case" falsevalue="" label="Ignore case when grouping" />
45 <param argument="--narm" type="boolean" truevalue="--narm" falsevalue="" label="Skip NA or NaN values" />
44 <repeat name="operations" default="1" min="1" title="Operation to perform on each group"> 46 <repeat name="operations" default="1" min="1" title="Operation to perform on each group">
45 <param name="op_name" type="select" label="Type"> 47 <param name="op_name" type="select" label="Type">
46 <option value="count">count</option> 48 <option value="count">count</option>
47 <option value="sum">sum</option> 49 <option value="sum">sum</option>
48 <option value="min">minimum</option> 50 <option value="min">minimum</option>
121 <has_n_lines n="7"/> 123 <has_n_lines n="7"/>
122 <has_line line="Arts,1310"/> 124 <has_line line="Arts,1310"/>
123 </assert_contents> 125 </assert_contents>
124 </output> 126 </output>
125 </test> 127 </test>
128 <test><!-- test with a file containing NA and NaN values and the -narm parameter " -->
129 <param name="in_file" value="na_values_input.tsv" ftype="tabular" />
130 <param name="grouping" value="2" />
131 <param name="header_in" value="true" />
132 <param name="print_full_line" value="false" />
133 <param name="need_sort" value="true" />
134 <param name="narm" value="true" />
135 <repeat name="operations">
136 <param name="op_name" value="mean" />
137 <param name="op_column" value="3" />
138 </repeat>
139 <output name="out_file" ftype="tabular">
140 <assert_contents>
141 <has_n_lines n="2"/>
142 <has_line_matching expression="DE\t173.5"/>
143 <has_line_matching expression="NL\t177.5"/>
144 </assert_contents>
145 </output>
146 </test>
126 </tests> 147 </tests>
127 <help> 148 <help>
128 <![CDATA[ 149 <![CDATA[
129 @HELP_HEADER@ 150 @HELP_HEADER@
130 151