# HG changeset patch
# User iuc
# Date 1446050741 14400
# Node ID 60e287a6d17d519234ce67b781a3793660fb2c36

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 8a7a779896ce1b9b296557a2c31bd93f5fbb5462

diff -r 000000000000 -r 60e287a6d17d datamash-transpose.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/datamash-transpose.xml	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,45 @@
+<?xml version="1.0"?>
+<tool id="datamash_transpose" name="Transpose" version="1.0.6">
+    <description>rows/columns in a tabular file</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <command><![CDATA[datamash -W transpose < $in_file > $out_file]]></command>
+    <expand macro="inputs_outputs" />
+    <tests>
+        <test>
+            <param name="in_file" value="datamash_transpose_input.txt" />
+            <output file="datamash_transpose_output.txt" name="out_file" />
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+@HELP_HEADER@
+
+**Syntax**
+
+This tools transposes (swaps) rows/columns in a tabular input file.
+
+-----
+
+**Example**
+
+Input file::
+
+    Genes   NOX1  DcP  HH
+    Sample  A1    A2   B3
+    Counts  514   542  490
+
+Output file::
+
+    Genes  Sample  Counts
+    NOX1   A1      514
+    DcP    A2      542
+    HH     B3      490
+
+@HELP_FOOTER@
+]]>
+    </help>
+</tool>
diff -r 000000000000 -r 60e287a6d17d macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,40 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="inputs_outputs">
+        <inputs>
+            <param format="tabular" help="" label="Input tabular dataset" name="in_file" type="data" />
+            <yield />
+        </inputs>
+        <outputs>
+            <data format="tabular" name="out_file" label="${tool.name} on ${on_string}" />
+        </outputs>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="1.0.6">datamash</requirement>
+        </requirements>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code description="Error" level="fatal" range="1:" />
+        </stdio>
+    </xml>
+    <token name="@HELP_FOOTER@">
+-----
+
+**GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website.
+
+**GNU Datamash** is also available as a command-line program, see http://www.gnu.org/software/datamash/download/ .
+
+For more details about supported statistical operations, see Datamash_ website.
+
+.. _Datamash: http://www.gnu.org/software/datamash/
+    </token>
+    <token name="@HELP_HEADER@">
+.. class:: infomark
+
+**TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation->Convert* to convert it to **Tabular** type.
+
+-----
+    </token>
+</macros>
\ No newline at end of file
diff -r 000000000000 -r 60e287a6d17d test-data/datamash_reverse_input.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/datamash_reverse_input.txt	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,4 @@
+Genes	Sample	Counts
+NOX1	A1	514
+DcP	A2	542
+HH	B3	490
diff -r 000000000000 -r 60e287a6d17d test-data/datamash_reverse_output.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/datamash_reverse_output.txt	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,4 @@
+Counts	Sample	Genes
+514	A1	NOX1
+542	A2	DcP
+490	B3	HH
diff -r 000000000000 -r 60e287a6d17d test-data/datamash_transpose_input.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/datamash_transpose_input.txt	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,3 @@
+Genes	NOX1	DcP	HH
+Sample	A1	A2	B3
+Counts	514	542	490
diff -r 000000000000 -r 60e287a6d17d test-data/datamash_transpose_output.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/datamash_transpose_output.txt	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,4 @@
+Genes	Sample	Counts
+NOX1	A1	514
+DcP	A2	542
+HH	B3	490
diff -r 000000000000 -r 60e287a6d17d test-data/group_compute_input.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/group_compute_input.txt	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,84 @@
+Name	Major	Score
+Ignatius	Engineering	83
+Austin	Life-Sciences	91
+Zackery	Engineering	54
+Marques	Arts	58
+Darren	Business	94
+Darius	Social-Sciences	51
+Thanh	Engineering	53
+Joe'Quann	Engineering	75
+Bryan	Arts	68
+Devin	Engineering	92
+Joseph	Social-Sciences	61
+Joshua	Life-Sciences	14
+Ja'Won	Social-Sciences	37
+Tyreque	Arts	74
+Sage	Arts	55
+Antonio	Engineering	88
+Michael	Engineering	39
+Randy	Social-Sciences	68
+Dilan	Health-Medicine	84
+Omar	Engineering	99
+Zachary	Arts	80
+Faison	Engineering	47
+Angel	Health-Medicine	100
+Gabriel	Health-Medicine	100
+John	Life-Sciences	70
+Leonard	Business	87
+Juan	Business	79
+Jonathan	Health-Medicine	100
+Christopher	Life-Sciences	59
+Brandon	Life-Sciences	72
+D'Angelo	Health-Medicine	90
+Justin	Social-Sciences	90
+Israel	Health-Medicine	81
+William	Arts	46
+David	Social-Sciences	69
+Drake	Social-Sciences	59
+Drake	Social-Sciences	76
+Nathan	Arts	71
+Trevon	Arts	74
+Aaron	Business	83
+Daniel	Health-Medicine	91
+Kevin	Health-Medicine	100
+Antonio	Engineering	56
+Donovan	Arts	75
+Kerris	Business	82
+Andre	Health-Medicine	72
+Dakota	Business	83
+Aaron	Life-Sciences	58
+Walter	Arts	75
+Isaiah	Arts	80
+Christian	Life-Sciences	67
+Dalton	Health-Medicine	100
+Jesse	Social-Sciences	32
+Diego	Health-Medicine	82
+Nathen	Life-Sciences	46
+Anthony	Life-Sciences	32
+Christian	Business	88
+David	Business	92
+Avery	Engineering	51
+Paul	Arts	63
+Derek	Arts	60
+Levi	Arts	76
+Lance	Social-Sciences	65
+Sonny	Engineering	50
+Shawn	Arts	65
+Leonardo	Engineering	78
+Yeng	Life-Sciences	39
+Leroy	Social-Sciences	74
+Gurnam	Life-Sciences	66
+Fernando	Arts	78
+Williams	Social-Sciences	62
+Roberto	Arts	65
+Teriuse	Business	94
+Nathaniel	Arts	88
+Chase	Social-Sciences	27
+Caleb	Business	87
+Tysza	Business	92
+Nico	Arts	59
+Manuel	Social-Sciences	61
+Patrick	Health-Medicine	92
+Peter	Health-Medicine	86
+Allen	Life-Sciences	50
+Joel	Social-Sciences	72
diff -r 000000000000 -r 60e287a6d17d test-data/group_compute_output.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/group_compute_output.txt	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,7 @@
+GroupBy(Major)	sum(Score)
+Arts	1310
+Business	961
+Engineering	865
+Health-Medicine	1178
+Life-Sciences	664
+Social-Sciences	904
diff -r 000000000000 -r 60e287a6d17d tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Oct 28 12:45:41 2015 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="datamash" version="1.0.6">
+        <repository changeset_revision="414953c0168d" name="package_datamash_1_0_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>